I could see that being a problem if you used a brush or something to clean. My Siggs only ever have water in them, so I just soak them for a few minutes in warm soapy water, then use a cloth to clean the lipstick off the mouth area.
Like I said, for how *I* use my Siggs, I'm less concerned now. Plus, my lifetime exposure to BPA is probably more related to the liners in canned foods and microwaving of food in plastic.